BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB017E04SP1|AL427170
(1004 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig644 1246 0.0
>3x_Contig644
Length = 3211
Score = 1246 bits (621), Expect = 0.0
Identities = 654/669 (97%), Gaps = 2/669 (0%)
Strand = Plus / Plus
Query: 314 acgatagavcaatgaatggrtgavctgatcgatttatatgacgataaacgcactttgatt 373
|||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5 acgatagaacaatgaatggatga-ctgatcgatttatatgacgataaacgcactttgatt 63
Query: 374 tatggtggtagtgaaatattgtgaagacaatcacattacactaavacmagaatggcgtag 433
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 64 tatggtggtagtgaaatattgtgaagacaatcacattacactaaaacaagaatggcgtag 123
Query: 434 tttatacgctggtgacctatactatccctgatcagatttgcatatgcvgacttgagasar 493
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 124 tttatacgctggtgacctatactatccctgatcagatttgcatatgcagacttgagaaaa 183
Query: 494 gtacagctggagacgacaagcaaattaatgttggtggtgttgtttcctaavvsvtatcag 553
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 184 gtacagctggagacgacaagcaaattaatgttggtggtgttgtttcctaaaaaatatcag 243
Query: 554 tatgtsagaggacatcggatctgcagtagaaaacgaaagataccaacaaacctaacgatc 613
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tatgtaagaggacatcggatctgcagtagaaaacgaaagataccaacaaacctaacgatc 303
Query: 614 acctctccttcggttagtgaagaaagaatgatattgtcacccgagaaatgatggaaccac 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 acctctccttcggttagtgaagaaagaatgatattgtcacccgagaaatgatggaaccac 363
Query: 674 gcctacagccaaatagattatcaatatttatcagccaccctctttttcagcacaaaaggt 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gcctacagccaaatagattatcaatatttatcagccaccctctttttcagcacaaaaggt 423
Query: 734 ttaaaaaacggatatggatttgaggacttttcttcaaccttactgaaaagccacccatac 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttaaaaaacggatatggatttgaggacttttcttcaaccttactgaaaagccacccatac 483
Query: 794 tgtaggcccgaacgaggatagaatcgaccaggacgttgataaagaaaatgttcaacgctt 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgtaggcccgaacgaggatagaatcgaccaggacgttgataaagaaaatgttcaacgctt 543
Query: 854 gattttcttcctcttcatgtggaatttgggctactaagcaaaggrtactcaaccttacac 913
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 544 gattttcttcctcttcatgtggaatttgggctactaagcaaaggatactcaaccttacac 603
Query: 914 agaatgtaaaattg-atcaatgcagattcaaagcgcgggaacgtccctcctccagttata 972
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agaatgtaaaattgcatcaatgcagattcaaagcgcgggaacgtccctcctccagttata 663
Query: 973 aggtattgt 981
|||||||||
Sbjct: 664 aggtattgt 672
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.712 1.32
Gapped
Lambda K H
1.39 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7784
Number of Sequences: 1807
Number of extensions: 7784
Number of successful extensions: 426
Number of sequences better than 1.0e-20: 1
length of query: 1004
length of database: 10,358,551
effective HSP length: 16
effective length of query: 988
effective length of database: 10,329,639
effective search space: 10205683332
effective search space used: 10205683332
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.6 bits)
S2: 50 (100.8 bits)